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9 Commits
0.18.3
...
fc2e518d7e
| Author | SHA1 | Date | |
|---|---|---|---|
| fc2e518d7e | |||
| 14839dee5f | |||
| 915f3e9810 | |||
| fcd19fb09e | |||
| 989cc9b219 | |||
| b428c976d5 | |||
| fb4335006d | |||
| 12c17d3766 | |||
| dc51156490 |
@@ -1,15 +1,3 @@
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.on_load = function(ns) {
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check_and_init_scheme()
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# set global settings:
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set_global_options(
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shiny.host = "0.0.0.0",
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shiny.port = 1338,
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APP.DEBUG = FALSE
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)
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}
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#' @export
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#' @description костыли для упрощения работы себе
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@@ -17,23 +5,6 @@ set_global_options = function(
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SYMBOL_DELIM = "; ",
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...
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) {
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config_params_to_check <- c(
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"form_app_version",
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"form_id",
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"form_name",
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"form_app_configure_path",
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"form_auth_enabled",
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"form_schemes"
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)
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expected_params_in_config <- config_params_to_check %in% names(config::get())
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if (!all(expected_params_in_config)) {
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cli::cli_abort(c(
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"Необходимо добавить в файл конфига {.file config.yml} следующие параметры:",
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paste0(config_params_to_check[!expected_params_in_config], ":")
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))
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}
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options(
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SYMBOL_DELIM = SYMBOL_DELIM,
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@@ -55,6 +26,27 @@ ENABLED_SCHEMES <- stats::setNames(names(ENABLED_SCHEMES), ENABLED_SCHEMES)
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#' @export
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check_and_init_scheme = function() {
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cli::cli_inform(c("*" = "проверка файла конфигурации..."))
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config_params_to_check <- c(
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"form_app_version",
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"form_id",
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"form_name",
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"form_app_configure_path",
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"form_auth_enabled",
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"form_schemes"
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)
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expected_params_in_config <- config_params_to_check %in% names(config::get())
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if (!all(expected_params_in_config)) {
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cli::cli_abort(c(
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"Необходимо добавить в файл конфига {.file config.yml} следующие параметры:",
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paste0(config_params_to_check[!expected_params_in_config], ":")
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))
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}
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# -------------------
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cli::cli_inform(c("*" = "проверка схемы..."))
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options(box.path = here::here())
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@@ -81,16 +73,17 @@ check_and_init_scheme = function() {
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if (!all(file.exists(scheme_file))) {
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cli::cli_abort(c("Отсутствуют файлы схем для следующих наименований:", paste("-", names(scheme_file)[!file.exists(scheme_file)])))
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}
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db_files <- paste0(config::get("form_app_configure_path"), "/db/", scheme_names, ".sqlite")
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if (!dir.exists("temp")) dir.create("temp")
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hash_file <- "temp/schema_hash.rds"
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#
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exist_hash <- tools::md5sum(c(scheme_file, files_to_watch))
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# если первый запуск (нет файла с кешем) инициализация схемы
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if (!file.exists(hash_file) | !file.exists("temp/scheme.rds") | !all(file.exists(db_files))) {
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if (!file.exists(hash_file) | !file.exists("temp/scheme.rds")) {
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init_scheme(scheme_file)
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@@ -14,7 +14,7 @@ credentials <- data.frame(
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# Init the database
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shinymanager::create_db(
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credentials_data = credentials,
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sqlite_path = "config/auth.sqlite", # will be created
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sqlite_path = "temp/auth.sqlite", # will be created
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passphrase = Sys.getenv("AUTH_DB_KEY")
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# passphrase = "passphrase_wihtout_keyring"
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)
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BIN
all_bases/schemas/orphans_and_amyloidosis.xlsx
Normal file
BIN
all_bases/schemas/orphans_and_amyloidosis.xlsx
Normal file
Binary file not shown.
14
app.R
14
app.R
@@ -19,9 +19,19 @@ box::use(
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# глобальные переменные и проверка/инициация схемы:
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box::use(
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R/modules/global_options[set_global_options, check_and_init_scheme],
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R/modules/global_options[AUTH_ENABLED, ENABLED_SCHEMES],
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)
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# set global settings:
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set_global_options(
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shiny.host = "0.0.0.0",
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shiny.port = 1338,
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APP.DEBUG = FALSE
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)
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check_and_init_scheme()
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SCHMS <- readRDS("temp/scheme.rds")
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# CHECK FOR PANDOC ----------
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@@ -102,7 +112,7 @@ server <- function(input, output, session) {
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# check_credentials directly on sqlite db
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shinymanager::secure_server(
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check_credentials = shinymanager::check_credentials(
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db = "config/auth.sqlite",
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db = "temp/auth.sqlite",
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passphrase = Sys.getenv("AUTH_DB_KEY")
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),
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keep_token = TRUE
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@@ -1139,7 +1149,7 @@ server <- function(input, output, session) {
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# write vector to temp .Rmd file
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writeLines(empty_vec, temp_report, sep = "\n")
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# copy template .docx file
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file.copy("references/reference.docx", temp_template, overwrite = TRUE)
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file.copy("resources/references/reference.docx", temp_template, overwrite = TRUE)
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# render file via pandoc
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rmarkdown::render(
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@@ -1,6 +1,6 @@
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{
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"R": {
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"Version": "4.3.2",
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"Version": "4.3.3",
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"Repositories": [
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{
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"Name": "CRAN",
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