feat: bring config file back
This commit is contained in:
@@ -4,9 +4,8 @@ source("renv/activate.R")
|
|||||||
(function() {
|
(function() {
|
||||||
|
|
||||||
paths <- c(
|
paths <- c(
|
||||||
"FORM_AUTH_ENABLED",
|
"R_CONFIG_ACTIVE",
|
||||||
"FORM_VERSION",
|
"AUTH_DB_KEY"
|
||||||
"FORM_TITLE"
|
|
||||||
)
|
)
|
||||||
|
|
||||||
lines <- paths[Sys.getenv(paths) == ""]
|
lines <- paths[Sys.getenv(paths) == ""]
|
||||||
|
|||||||
1
.gitignore
vendored
1
.gitignore
vendored
@@ -4,6 +4,7 @@
|
|||||||
scheme.rds
|
scheme.rds
|
||||||
configs/schemas/d2tra_t.xlsx
|
configs/schemas/d2tra_t.xlsx
|
||||||
configs/schemas/antifib.xlsx
|
configs/schemas/antifib.xlsx
|
||||||
|
/_devel
|
||||||
.Renviron
|
.Renviron
|
||||||
.DS_Store
|
.DS_Store
|
||||||
.lintr
|
.lintr
|
||||||
|
|||||||
41
app.R
41
app.R
@@ -9,12 +9,9 @@ suppressPackageStartupMessages({
|
|||||||
library(shinymanager)
|
library(shinymanager)
|
||||||
})
|
})
|
||||||
|
|
||||||
# КАК ЗАПРЯТЯАТЬ ID
|
|
||||||
|
|
||||||
# SOURCE FILES ============================
|
# SOURCE FILES ============================
|
||||||
box::purge_cache()
|
box::purge_cache()
|
||||||
box::use(
|
box::use(
|
||||||
configs/enabled_schemes[enabled_schemes],
|
|
||||||
modules/utils,
|
modules/utils,
|
||||||
modules/global_options,
|
modules/global_options,
|
||||||
modules/db,
|
modules/db,
|
||||||
@@ -22,17 +19,25 @@ box::use(
|
|||||||
modules/scheme_generator[scheme_R6]
|
modules/scheme_generator[scheme_R6]
|
||||||
)
|
)
|
||||||
|
|
||||||
# SETTINGS ================================
|
|
||||||
FILE_SCHEME <- fs::path("configs/schemas", "schema.xlsx")
|
|
||||||
AUTH_ENABLED <- Sys.getenv("FORM_AUTH_ENABLED", FALSE)
|
|
||||||
HEADER_TEXT <- sprintf("%s (%s)", Sys.getenv("FORM_TITLE", "NA"), Sys.getenv("FORM_VERSION", "NA"))
|
|
||||||
|
|
||||||
global_options$set_global_options(
|
global_options$set_global_options(
|
||||||
shiny.host = "0.0.0.0"
|
shiny.host = "0.0.0.0"
|
||||||
# enabled_schemes = "example_of_scheme"
|
|
||||||
)
|
)
|
||||||
|
|
||||||
global_options$check_and_init_scheme()
|
global_options$check_and_init_scheme()
|
||||||
|
|
||||||
|
# global vars
|
||||||
|
box::use(
|
||||||
|
modules/global_options[AUTH_ENABLED]
|
||||||
|
)
|
||||||
|
|
||||||
|
# SETTINGS ================================
|
||||||
|
HEADER_TEXT <- sprintf("%s (%s)", config::get("form_name"), config::get("form_app_version"))
|
||||||
|
|
||||||
|
# sadasdasdasdasdas
|
||||||
|
options(box.path = config::get("form_configs_path"))
|
||||||
|
box::use(enabled/enabled_schemes[enabled_schemes])
|
||||||
|
|
||||||
|
|
||||||
# CHECK FOR PANDOC
|
# CHECK FOR PANDOC
|
||||||
# TEMP ! NEED TO HANDLE
|
# TEMP ! NEED TO HANDLE
|
||||||
rmarkdown::find_pandoc(dir = "/opt/homebrew/bin/")
|
rmarkdown::find_pandoc(dir = "/opt/homebrew/bin/")
|
||||||
@@ -45,7 +50,14 @@ schms <- readRDS("scheme.rds")
|
|||||||
|
|
||||||
# UI =======================
|
# UI =======================
|
||||||
ui <- page_sidebar(
|
ui <- page_sidebar(
|
||||||
title = HEADER_TEXT,
|
# title = HEADER_TEXT,
|
||||||
|
title = tagList(
|
||||||
|
h4(HEADER_TEXT, style = "margin-top: .5rem"),
|
||||||
|
tooltip(
|
||||||
|
span("about", icon("circle-info", lib = "font-awesome")),
|
||||||
|
"Данный функционал позволяет обрабатывать информацию о пациентах на комиссию, используя Excel (обновление данных возможно через окно формирования списка пациентов)"
|
||||||
|
)
|
||||||
|
),
|
||||||
theme = bs_theme(version = 5, preset = "bootstrap"),
|
theme = bs_theme(version = 5, preset = "bootstrap"),
|
||||||
sidebar = sidebar(
|
sidebar = sidebar(
|
||||||
actionButton("add_new_main_key_button", "Добавить новую запись", icon("plus", lib = "font-awesome")),
|
actionButton("add_new_main_key_button", "Добавить новую запись", icon("plus", lib = "font-awesome")),
|
||||||
@@ -59,12 +71,9 @@ ui <- page_sidebar(
|
|||||||
position = "left",
|
position = "left",
|
||||||
open = list(mobile = "always")
|
open = list(mobile = "always")
|
||||||
),
|
),
|
||||||
as_fill_carrier(uiOutput("main_ui_navset"))
|
as_fill_carrier(uiOutput("main_ui_navset")),
|
||||||
)
|
)
|
||||||
|
|
||||||
# MODALS ========================
|
|
||||||
# окно для подвтерждения очищения данных
|
|
||||||
|
|
||||||
# init auth =======================
|
# init auth =======================
|
||||||
if (AUTH_ENABLED) {
|
if (AUTH_ENABLED) {
|
||||||
# shinymanager::set_labels("en", "Please authenticate" = "scheme()")
|
# shinymanager::set_labels("en", "Please authenticate" = "scheme()")
|
||||||
@@ -898,6 +907,8 @@ server <- function(input, output, session) {
|
|||||||
"Пользователь" , ifelse(AUTH_ENABLED, res_auth$user, "anonymous"),
|
"Пользователь" , ifelse(AUTH_ENABLED, res_auth$user, "anonymous"),
|
||||||
"Название базы" , names(enabled_schemes)[enabled_schemes == scheme()],
|
"Название базы" , names(enabled_schemes)[enabled_schemes == scheme()],
|
||||||
"id базы" , scheme(),
|
"id базы" , scheme(),
|
||||||
|
"id формы" , config::get("form_id"),
|
||||||
|
"ver формы" , config::get("form_app_version"),
|
||||||
"Время выгрузки" , format(Sys.time(), "%d.%m.%Y %H:%M:%S"),
|
"Время выгрузки" , format(Sys.time(), "%d.%m.%Y %H:%M:%S"),
|
||||||
)
|
)
|
||||||
|
|
||||||
@@ -1196,6 +1207,8 @@ server <- function(input, output, session) {
|
|||||||
action_row <- tibble(
|
action_row <- tibble(
|
||||||
date = Sys.time(),
|
date = Sys.time(),
|
||||||
user = ifelse(AUTH_ENABLED, res_auth$user, "anonymous"),
|
user = ifelse(AUTH_ENABLED, res_auth$user, "anonymous"),
|
||||||
|
app_id = config::get("form_id"),
|
||||||
|
app_ver = config::get("form_app_version"),
|
||||||
remote_addr = session$request$REMOTE_ADDR,
|
remote_addr = session$request$REMOTE_ADDR,
|
||||||
key = key,
|
key = key,
|
||||||
action = action,
|
action = action,
|
||||||
|
|||||||
17
config.yml
Normal file
17
config.yml
Normal file
@@ -0,0 +1,17 @@
|
|||||||
|
default:
|
||||||
|
form_app_version: 0.15.0
|
||||||
|
|
||||||
|
prod:
|
||||||
|
form_db_path: db
|
||||||
|
form_configs_path: configs
|
||||||
|
form_auth_enabled: true
|
||||||
|
form_id: new_form
|
||||||
|
form_name: NEW FORMY
|
||||||
|
|
||||||
|
devel:
|
||||||
|
form_db_path: _devel/db
|
||||||
|
form_configs_path: _devel/configs
|
||||||
|
form_auth_enabled: false
|
||||||
|
form_id: new_form
|
||||||
|
form_name: NEW FORMY
|
||||||
|
form_app_version: 0.15.0 dev
|
||||||
@@ -1,5 +1,4 @@
|
|||||||
#' @export
|
#' @export
|
||||||
enabled_schemes <- c(
|
enabled_schemes <- c(
|
||||||
`Тестовая база данных` = "example_of_scheme"
|
`Тестовая база данных` = "example_of_scheme"
|
||||||
# `D2TRA (для отладки)` = "d2tra_t"
|
|
||||||
)
|
)
|
||||||
@@ -70,10 +70,7 @@ init_val = function(scheme, ns) {
|
|||||||
val_is_a_number = function(x) {
|
val_is_a_number = function(x) {
|
||||||
|
|
||||||
# exit if empty
|
# exit if empty
|
||||||
if (is_this_empty_value(x)) {
|
if (is_this_empty_value(x)) return(NULL)
|
||||||
return(NULL)
|
|
||||||
}
|
|
||||||
|
|
||||||
# хак для пропуска значений
|
# хак для пропуска значений
|
||||||
if (x == "NA") return(NULL)
|
if (x == "NA") return(NULL)
|
||||||
|
|
||||||
@@ -87,10 +84,7 @@ val_is_a_number = function(x) {
|
|||||||
val_number_within_a_range = function(x, ranges) {
|
val_number_within_a_range = function(x, ranges) {
|
||||||
|
|
||||||
# exit if empty
|
# exit if empty
|
||||||
if (is_this_empty_value(x)) {
|
if (is_this_empty_value(x)) return(NULL)
|
||||||
return(NULL)
|
|
||||||
}
|
|
||||||
|
|
||||||
if (x == "NA") return(NULL)
|
if (x == "NA") return(NULL)
|
||||||
|
|
||||||
# замена разделителя десятичных цифр
|
# замена разделителя десятичных цифр
|
||||||
|
|||||||
@@ -4,7 +4,11 @@
|
|||||||
#' @param where text mark to distingiush calss
|
#' @param where text mark to distingiush calss
|
||||||
make_db_connection = function(scheme, where = "") {
|
make_db_connection = function(scheme, where = "") {
|
||||||
if (getOption("APP.DEBUG", FALSE)) message("=== DB CONNECT ", where)
|
if (getOption("APP.DEBUG", FALSE)) message("=== DB CONNECT ", where)
|
||||||
DBI::dbConnect(RSQLite::SQLite(), fs::path("db", scheme, ext = "sqlite"))
|
DBI::dbConnect(RSQLite::SQLite(), fs::path(
|
||||||
|
config::get("form_db_path"),
|
||||||
|
scheme,
|
||||||
|
ext = "sqlite"
|
||||||
|
))
|
||||||
}
|
}
|
||||||
|
|
||||||
#' @export
|
#' @export
|
||||||
@@ -12,12 +16,14 @@ make_db_connection = function(scheme, where = "") {
|
|||||||
#' Function to close connection to db, disigned to easy dubugging and
|
#' Function to close connection to db, disigned to easy dubugging and
|
||||||
#' hide warnings.
|
#' hide warnings.
|
||||||
close_db_connection = function(con, where = "") {
|
close_db_connection = function(con, where = "") {
|
||||||
|
|
||||||
tryCatch(
|
tryCatch(
|
||||||
expr = DBI::dbDisconnect(con),
|
expr = DBI::dbDisconnect(con),
|
||||||
error = function(e) print(e),
|
error = function(e) print(e),
|
||||||
warning = function(w) if (getOption("APP.DEBUG", FALSE)) message("=!= ALREADY DISCONNECTED ", where),
|
warning = function(w) if (getOption("APP.DEBUG", FALSE)) message("=!= ALREADY DISCONNECTED ", where),
|
||||||
finally = if (getOption("APP.DEBUG", FALSE)) message("=/= DB DISCONNECT ", where)
|
finally = if (getOption("APP.DEBUG", FALSE)) message("=/= DB DISCONNECT ", where)
|
||||||
)
|
)
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
||||||
#' @export
|
#' @export
|
||||||
|
|||||||
@@ -3,13 +3,28 @@
|
|||||||
set_global_options = function(
|
set_global_options = function(
|
||||||
SYMBOL_DELIM = "; ",
|
SYMBOL_DELIM = "; ",
|
||||||
APP.DEBUG = FALSE,
|
APP.DEBUG = FALSE,
|
||||||
# APP.FILE_DB = fs::path("data.sqlite"),
|
|
||||||
shiny.host = "127.0.0.1",
|
shiny.host = "127.0.0.1",
|
||||||
shiny.port = 1338,
|
shiny.port = 1338,
|
||||||
...
|
...
|
||||||
) {
|
) {
|
||||||
|
|
||||||
|
config_params_to_check <- c(
|
||||||
|
"form_app_version",
|
||||||
|
"form_db_path",
|
||||||
|
"form_configs_path",
|
||||||
|
"form_auth_enabled",
|
||||||
|
"form_id",
|
||||||
|
"form_name"
|
||||||
|
)
|
||||||
|
|
||||||
|
expected_params_in_config <- config_params_to_check %in% names(config::get())
|
||||||
|
if (!all(expected_params_in_config)) {
|
||||||
|
cli::cli_abort(c("ну так не пойдет:", paste("-", config_params_to_check[!expected_params_in_config])))
|
||||||
|
}
|
||||||
|
|
||||||
options(
|
options(
|
||||||
SYMBOL_DELIM = SYMBOL_DELIM,
|
SYMBOL_DELIM = SYMBOL_DELIM,
|
||||||
|
# form.db_path = config::get("form_db_path"),
|
||||||
APP.DEBUG = APP.DEBUG,
|
APP.DEBUG = APP.DEBUG,
|
||||||
# APP.FILE_DB = APP.FILE_DB,
|
# APP.FILE_DB = APP.FILE_DB,
|
||||||
shiny.host = shiny.host,
|
shiny.host = shiny.host,
|
||||||
@@ -18,27 +33,30 @@ set_global_options = function(
|
|||||||
)
|
)
|
||||||
}
|
}
|
||||||
|
|
||||||
|
#' @export
|
||||||
|
AUTH_ENABLED <- Sys.getenv("FORM_AUTH_ENABLED", FALSE)
|
||||||
|
|
||||||
#' @export
|
#' @export
|
||||||
check_and_init_scheme = function() {
|
check_and_init_scheme = function() {
|
||||||
|
|
||||||
cli::cli_inform(c("*" = "проверка схемы..."))
|
cli::cli_inform(c("*" = "проверка схемы..."))
|
||||||
|
|
||||||
options(box.path = here::here())
|
options(box.path = config::get("form_configs_path"))
|
||||||
box::use(configs/enabled_schemes[enabled_schemes])
|
box::use(enabled/enabled_schemes[enabled_schemes])
|
||||||
|
|
||||||
files_to_watch <- c(
|
files_to_watch <- c(
|
||||||
"configs/enabled_schemes.R",
|
fs::path(config::get("form_configs_path"), "enabled", "enabled_schemes.R"),
|
||||||
"modules/scheme_generator.R",
|
"modules/scheme_generator.R",
|
||||||
"modules/utils.R"
|
"modules/utils.R"
|
||||||
)
|
)
|
||||||
|
|
||||||
scheme_names <- enabled_schemes
|
scheme_names <- enabled_schemes
|
||||||
scheme_file <- paste0("configs/schemas/", scheme_names, ".xlsx")
|
scheme_file <- paste0(config::get("form_configs_path"), "/schemas/", scheme_names, ".xlsx")
|
||||||
scheme_file <- stats::setNames(scheme_file, scheme_names)
|
scheme_file <- stats::setNames(scheme_file, scheme_names)
|
||||||
|
|
||||||
if (!all(file.exists(scheme_file))) cli::cli_abort(c("Отсутствуют файлы схем для следующих наименований:", paste("-", names(scheme_file)[!file.exists(scheme_file)])))
|
if (!all(file.exists(scheme_file))) cli::cli_abort(c("Отсутствуют файлы схем для следующих наименований:", paste("-", names(scheme_file)[!file.exists(scheme_file)])))
|
||||||
|
|
||||||
db_files <- paste0("db/", scheme_names, ".sqlite")
|
db_files <- paste0(config::get("form_db_path"), "/", scheme_names, ".sqlite")
|
||||||
|
|
||||||
hash_file <- "temp/schema_hash.rds"
|
hash_file <- "temp/schema_hash.rds"
|
||||||
|
|
||||||
@@ -54,6 +72,8 @@ check_and_init_scheme = function() {
|
|||||||
} else {
|
} else {
|
||||||
|
|
||||||
saved_hash <- readRDS(hash_file)
|
saved_hash <- readRDS(hash_file)
|
||||||
|
print(exist_hash)
|
||||||
|
print(saved_hash)
|
||||||
|
|
||||||
# если данные были изменены проводим реинициализацию таблицы и схемы
|
# если данные были изменены проводим реинициализацию таблицы и схемы
|
||||||
if (!all(exist_hash == saved_hash)) {
|
if (!all(exist_hash == saved_hash)) {
|
||||||
@@ -79,7 +99,7 @@ init_scheme = function(scheme_file) {
|
|||||||
modules/scheme_generator[scheme_R6]
|
modules/scheme_generator[scheme_R6]
|
||||||
)
|
)
|
||||||
|
|
||||||
if (!dir.exists("db")) dir.create("db")
|
if (!dir.exists(config::get("form_db_path"))) dir.create(config::get("form_db_path"))
|
||||||
|
|
||||||
cli::cli_h1("Инициализация схемы")
|
cli::cli_h1("Инициализация схемы")
|
||||||
schms <- purrr::map2(
|
schms <- purrr::map2(
|
||||||
|
|||||||
Reference in New Issue
Block a user